resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes

resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes

Duthie A.B., Mangan R., McKeon C.R., Tinsley M.C. & Bussière L.F. (2023)

Abstract

The evolution of pesticide resistance is a widespread problem with potentially severe consequences for global food security. We introduce the resevol R package, which simulates individual-based models of pests with evolving genomes that produce complex, polygenic, and covarying traits affecting pest life history and pesticide resistance. Simulations are modelled on a spatially-explicit and highly customisable landscape in which crop and pesticide application and rotation can vary, making the package a highly flexible tool for both general and tactical models of pest management and resistance evolution. We present the key features of the resevol package and demonstrate its use for a simple example simulating pests with two covarying traits. The resevol R package is open source under GNU Public License. All source code and documentation are available on GitHub.

Published in: PLOS Computational Biology, 19 (12), p. e1011691. https://doi.org/10.1371/journal.pcbi.1011691