<?xml version="1.0" encoding="UTF-8"?><rss xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:content="http://purl.org/rss/1.0/modules/content/" xmlns:atom="http://www.w3.org/2005/Atom" version="2.0" xmlns:media="http://search.yahoo.com/mrss/"><channel><title><![CDATA[C. Rose McKeon]]></title><description><![CDATA[PhD Researcher studying the underlying genetics of fungal biopesticide resistance]]></description><link>https://rosemckeon.uk/</link><image><url>https://rosemckeon.uk/favicon.png</url><title>C. Rose McKeon</title><link>https://rosemckeon.uk/</link></image><generator>Ghost 5.82</generator><lastBuildDate>Mon, 06 Apr 2026 09:38:27 GMT</lastBuildDate><atom:link href="https://rosemckeon.uk/rss/" rel="self" type="application/rss+xml"/><ttl>60</ttl><item><title><![CDATA[Safeguard Workshop Tool]]></title><description><![CDATA[We developed a workshop tool designed to spark discussion among stakeholders regarding the intersection of policy and evidence surrounding the pressures facing pollinators.]]></description><link>https://rosemckeon.uk/safeguard-workshop-tool/</link><guid isPermaLink="false">69023caa0aa64c04d93ebff0</guid><category><![CDATA[Tools]]></category><category><![CDATA[Reports]]></category><dc:creator><![CDATA[C. Rose McKeon]]></dc:creator><pubDate>Tue, 04 Nov 2025 13:12:00 GMT</pubDate><media:content url="https://images.unsplash.com/photo-1677088291764-02fd1a6fe63c?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDE4fHxwb2xsaW5hdG9yJTIwbGFuZHNjYXBlJTIwZGFya3xlbnwwfHx8fDE3NjE3NTU1NTh8MA&amp;ixlib=rb-4.1.0&amp;q=80&amp;w=2000" medium="image"/><content:encoded><![CDATA[<h3 id="assessing-recommended-pollinator-interventions">Assessing recommended pollinator interventions</h3><img src="https://images.unsplash.com/photo-1677088291764-02fd1a6fe63c?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDE4fHxwb2xsaW5hdG9yJTIwbGFuZHNjYXBlJTIwZGFya3xlbnwwfHx8fDE3NjE3NTU1NTh8MA&amp;ixlib=rb-4.1.0&amp;q=80&amp;w=2000" alt="Safeguard Workshop Tool"><p>As part of a team from the <a href="https://www.stir.ac.uk/?ref=rosemckeon.uk" rel="noreferrer">University of Stirling</a>, we offered support to <a href="https://www.safeguard.biozentrum.uni-wuerzburg.de/News/ViewNews.aspx?NewsId=159&amp;ref=rosemckeon.uk" rel="noreferrer">a Safeguard and BioAgora workshop</a> at the science-policy interface. In collaboration with <a href="https://www.stir.ac.uk/people/256880?ref=rosemckeon.uk" rel="noreferrer">Brad Duthie</a> and <a href="https://www.stir.ac.uk/people/257162?ref=rosemckeon.uk" rel="noreferrer">Nils Bunnefeld</a>, we developed a workshop tool in the form of a game. The aim was to create a game-based dialogue among stakeholders on the integrated assessment of European policy interventions. Specifically, these interventions were top-ranked by experts for their ability to improve pollinator abundance and diversity (in line with sustainability goals).</p><p>Over the course of two months, we designed the game together, and I developed those ideas into a web application (more technical details are provided below). I parameterised the game with findings from a <a href="https://www.safeguard.biozentrum.uni-wuerzburg.de/?ref=rosemckeon.uk" rel="noreferrer">Safeguard</a> expert elicitation under the guidance of <a href="https://umr-agroecologie.dijon.hub.inrae.fr/personnels/college-de-direction-codir/vanbergen-adam?ref=rosemckeon.uk" rel="noreferrer">Adam Vanbergen</a> of <a href="https://www.inrae.fr/?ref=rosemckeon.uk" rel="noreferrer">INRAE</a>. </p><p>A preliminary workshop conducted in December 2024 at the <a href="https://europeanlandowners.org/?ref=rosemckeon.uk" rel="noreferrer">European Land Owners</a> Conference informed a round of development changes to the game prior to the data collection workshop, which took place in September 2025 with support from the <a href="https://ieep.eu/?ref=rosemckeon.uk" rel="noreferrer">Institute for European Environmental Policy</a>.</p><div class="kg-card kg-callout-card kg-callout-card-green"><div class="kg-callout-text"><b><strong style="white-space: pre-wrap;">Data Collection Workshop:</strong></b> 10th September 2025 @ the Maison Ir&#xE8;ne et Fr&#xE9;d&#xE9;ric Joliot-Curie. Co-organised by 1) the <a href="https://www.inrae.fr/?ref=rosemckeon.uk" rel="noreferrer">National Institute for Agriculture, Food and the Environment</a> (INRAE), 2) the <a href="https://www.stir.ac.uk/?ref=rosemckeon.uk" rel="noreferrer">University of Stirling</a>, 3) <a href="https://bioagora.eu/?ref=rosemckeon.uk" rel="noreferrer">BioAgora</a>, and 4) the <a href="https://ieep.eu/?ref=rosemckeon.uk" rel="noreferrer">Institute for European Environmental Policy</a> (IEEP).</div></div><h3 id="an-integrated-assessment-of-policy-interventions-for-pollinators-a-game-based-dialogue-report-excerpt">An integrated assessment of policy interventions for pollinators: a game-based dialogue (Report Excerpt)</h3><p><a href="https://ieep.eu/who-we-are/our-people/auriane-flottes-de-pouzols/?ref=rosemckeon.uk" rel="noreferrer">Auriane Flottes de Pouzols</a><sup>4</sup>, <a href="https://orcid.org/0000-0002-4198-657X?ref=rosemckeon.uk" rel="noreferrer">C. Rose McKeon</a><sup>2</sup>, <a href="https://ieep.eu/who-we-are/our-people/evelyn-underwood/?ref=rosemckeon.uk" rel="noreferrer">Evelyn Underwood</a><sup>4</sup>, <a href="https://orcid.org/0000-0001-8320-5535?ref=rosemckeon.uk" rel="noreferrer">Adam J. Vanbergen</a><sup>1,3</sup>, <a href="https://orcid.org/0000-0001-8343-4995?ref=rosemckeon.uk" rel="noreferrer">Brad Duthie</a><sup>2</sup> &amp; <a href="https://orcid.org/0000-0002-1349-4463?ref=rosemckeon.uk" rel="noreferrer">Nils Bunnefeld</a><sup>2</sup> (2025).</p><p>This workshop created a space for a game-based dialogue. Participants were able to explore the intersection of policy and scientific evidence in responding to the pressures facing pollinators. Stakeholders from policy, business, NGOs and researchers played out in virtual landscapes various pollinator management interventions in agricultural, urban, and nature conservation contexts. The game revealed the expected impacts on biodiversity, ecosystem services and human well-being, as assessed by Safeguard pollinator experts. [...]</p><p>After a lively gaming session, participants were invited to share their experiences and provide feedback. The discussion, moderated by Evelyn Underwood (IEEP), revealed a range of insightful observations about the game&#x2019;s design, purpose, and impact. </p><p>Participants responded to the opportunity to explore policy scenarios in a dynamic and participatory format. The game stimulated in-depth discussion on a wide range of environmental policy dimensions, including the role of evidence-based decision-making, the scale and design of policy interventions, and the trade-offs between ecological and socio-economic outcomes. Many participants asked detailed questions about the science behind the game, including the underlying evidence, parameterisation, and expert assessment process. This indicated a strong level of critical engagement and curiosity, highlighting the game&#x2019;s potential to support dialogue across diverse stakeholder groups. [...]</p><p>(The full report is <a href="https://www.safeguard.biozentrum.uni-wuerzburg.de/Project/PublicFileSystem/media/workshops/Integrated%20assessment%20of%20policy%20interventions%20for%20pollinators%20-%20A%20game-based%20dialogue.pdf?ref=rosemckeon.uk" rel="noreferrer">available here</a>.)</p><div class="kg-card kg-button-card kg-align-center"><a href="https://safeguard-pollinator-land.rosemckeon.uk/agri_degraded?ref=rosemckeon.uk" class="kg-btn kg-btn-accent">Play for yourself</a></div><figure class="kg-card kg-gallery-card kg-width-wide kg-card-hascaption"><div class="kg-gallery-container"><div class="kg-gallery-row"><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/10/semi-natural-degraded-landscape.png" width="2000" height="1121" loading="lazy" alt="Safeguard Workshop Tool" srcset="https://rosemckeon.uk/content/images/size/w600/2025/10/semi-natural-degraded-landscape.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/10/semi-natural-degraded-landscape.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/10/semi-natural-degraded-landscape.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/10/semi-natural-degraded-landscape.png 2400w" sizes="(min-width: 720px) 720px"></div><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/10/urban-degraded-landscape.png" width="2000" height="1121" loading="lazy" alt="Safeguard Workshop Tool" srcset="https://rosemckeon.uk/content/images/size/w600/2025/10/urban-degraded-landscape.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/10/urban-degraded-landscape.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/10/urban-degraded-landscape.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/10/urban-degraded-landscape.png 2400w" sizes="(min-width: 720px) 720px"></div><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/10/agricultural-degraded-landscape.png" width="2000" height="1118" loading="lazy" alt="Safeguard Workshop Tool" srcset="https://rosemckeon.uk/content/images/size/w600/2025/10/agricultural-degraded-landscape.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/10/agricultural-degraded-landscape.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/10/agricultural-degraded-landscape.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/10/agricultural-degraded-landscape.png 2400w" sizes="(min-width: 720px) 720px"></div></div></div><figcaption><p><span style="white-space: pre-wrap;">Game graphics by </span><a href="https://www.penandpaper-sci.com/?ref=rosemckeon.uk" rel="noreferrer"><span style="white-space: pre-wrap;">Pen &amp; Paper Science</span></a></p></figcaption></figure><h3 id="technical-details">Technical Details</h3><p>The game we developed was mainly written in <a href="https://www.typescriptlang.org/?ref=rosemckeon.uk" rel="noreferrer">TypeScript</a> on the <a href="https://angular.dev/overview?ref=rosemckeon.uk" rel="noreferrer">Angular</a> framework, with some <a href="https://www.r-project.org/?ref=rosemckeon.uk" rel="noreferrer">R</a> and <a href="https://www.json.org/json-en.html?ref=rosemckeon.uk" rel="noreferrer">JSON</a> utilised to populate the game with real data, and an API written in <a href="https://www.php.net/?ref=rosemckeon.uk" rel="noreferrer">PHP</a>. The game codebase is publicly available <a href="https://github.com/rosemckeon/safeguard-pollinator-land?ref=rosemckeon.uk" rel="noreferrer">on GitHub</a>.</p><div class="kg-card kg-button-card kg-align-center"><a href="https://github.com/rosemckeon/safeguard-pollinator-land?ref=rosemckeon.uk" class="kg-btn kg-btn-accent">The game codebase on GitHub</a></div>]]></content:encoded></item><item><title><![CDATA[Resistance Evolution in Parasitoid Biocontrol: Understanding the Rule, managing the exceptions.]]></title><description><![CDATA[In contrast to chemical pest control, biological control (biocontrol) is generally considered evolutionarily stable, with pests rarely evolving resistance to agents such as parasitoid wasps.]]></description><link>https://rosemckeon.uk/resistance-evolution-in-parasitoid-biocontrol/</link><guid isPermaLink="false">68b054db3c5f63050ac420c0</guid><category><![CDATA[Papers]]></category><dc:creator><![CDATA[C. Rose McKeon]]></dc:creator><pubDate>Wed, 30 Jul 2025 13:24:00 GMT</pubDate><media:content url="https://images.unsplash.com/photo-1625398795614-1c1c51cc5e7e?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDl8fGNsb3ZlciUyMGZpZWxkJTIwZGFya3xlbnwwfHx8fDE3NTY0NzA3ODl8MA&amp;ixlib=rb-4.1.0&amp;q=80&amp;w=2000" medium="image"/><content:encoded><![CDATA[<img src="https://images.unsplash.com/photo-1625398795614-1c1c51cc5e7e?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDl8fGNsb3ZlciUyMGZpZWxkJTIwZGFya3xlbnwwfHx8fDE3NTY0NzA3ODl8MA&amp;ixlib=rb-4.1.0&amp;q=80&amp;w=2000" alt="Resistance Evolution in Parasitoid Biocontrol: Understanding the Rule, managing the exceptions."><p><a href="https://orcid.org/0000-0002-4198-657X?ref=rosemckeon.uk" rel="noreferrer">C. Rose McKeon</a>, <a href="https://orcid.org/0000-0002-1060-7389?ref=rosemckeon.uk" rel="noreferrer">Marie Joy B. Beltran</a>, <a href="https://www.linkedin.com/in/mia-mcgowan-212a85183/?ref=rosemckeon.uk" rel="noreferrer">Mia C. McGowan</a>, <a href="https://orcid.org/0000-0001-5918-3583?ref=rosemckeon.uk" rel="noreferrer">Rebecca Boulton</a>.</p><blockquote><strong>Published in:</strong> Current Opinion in Insect Science, Feb 2026. <a href="https://doi.org/10.1016/j.cois.2026.101485?ref=rosemckeon.uk">https://doi.org/10.1016/j.cois.2026.101485</a></blockquote><h3 id="abstract">Abstract</h3><p>In contrast to chemical pest control, biological control (biocontrol) is generally considered evolutionarily stable, with pests rarely evolving resistance to agents such as parasitoid wasps. In 1997, Holt &amp; Hochberg outlined five principles to explain this pattern. Here, we review post-1997 case studies where resistance has contributed to the breakdown of parasitoid-based biocontrol. We evaluate how these examples align with or challenge Holt &amp; Hochberg&#x2019;s framework and propose updates to reflect new findings. While resistance remains rare, reported cases suggest that breakdowns are more likely when pests possess greater standing genetic variation than their parasitoid enemies. We argue that long-term stability depends not just on host constraints but also on the potential for parasitoid virulence to evolve. Finally, we offer practical recommendations for biocontrol practitioners and regulators to minimise the risk of resistance evolution in parasitoid-based systems.<strong>&#xA0;</strong>&#xA0;</p><h3 id="highlights">Highlights</h3><ul><li>Unlike chemical control, pests rarely evolve resistance to biocontrol agents.&#xA0;</li><li>Mismatches in genetic variation between host/parasitoid can explain exceptions.&#xA0;</li><li>Maintaining genetic variation in parasitoids impedes resistance evolution in pests.&#xA0;</li><li>Using multiple parasitoid strains/species can minimise resistance evolution.&#xA0;&#xA0;</li><li>Heterogeneous landscapes weaken and vary selection on resistant genotypes.&#xA0;&#xA0;</li></ul>]]></content:encoded></item><item><title><![CDATA[A practical approach to developing and using online games for transdisciplinary research into complex social-ecological systems]]></title><description><![CDATA[Research games provide a promising avenue for studying social-ecological systems because they can capture complexity and reflect multiple stakeholders’ perspectives. However...]]></description><link>https://rosemckeon.uk/developing-games-for-researching-social-ecological-systems/</link><guid isPermaLink="false">67a61c5a6f0afd0566cae40b</guid><category><![CDATA[Papers]]></category><category><![CDATA[Tools]]></category><dc:creator><![CDATA[C. Rose McKeon]]></dc:creator><pubDate>Fri, 07 Feb 2025 14:57:39 GMT</pubDate><media:content url="https://images.unsplash.com/photo-1483428400520-675ef69a3bc4?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDQzfHx0b2dldGhlcnxlbnwwfHx8fDE3Mzg5NDAxNDd8MA&amp;ixlib=rb-4.0.3&amp;q=80&amp;w=2000" medium="image"/><content:encoded><![CDATA[<img src="https://images.unsplash.com/photo-1483428400520-675ef69a3bc4?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDQzfHx0b2dldGhlcnxlbnwwfHx8fDE3Mzg5NDAxNDd8MA&amp;ixlib=rb-4.0.3&amp;q=80&amp;w=2000" alt="A practical approach to developing and using online games for transdisciplinary research into complex social-ecological systems"><p><a href="https://orcid.org/0000-0001-7565-770X?ref=rosemckeon.uk" rel="noreferrer">Diana E. Valero</a>, <a href="https://orcid.org/0000-0002-4198-657X?ref=rosemckeon.uk" rel="noreferrer">C. Rose McKeon</a>, <a href="https://orcid.org/0000-0001-8937-8381?ref=rosemckeon.uk" rel="noreferrer">Luc Bussi&#xE8;re</a>, <a href="https://orcid.org/0000-0001-7342-5171?ref=rosemckeon.uk" rel="noreferrer">Nat&#xE1;lia Corniani</a>, <a href="https://orcid.org/0000-0003-4146-5210?ref=rosemckeon.uk" rel="noreferrer">Yelitza C. Colmenarez</a>, <a href="https://orcid.org/0000-0002-6967-3882?ref=rosemckeon.uk" rel="noreferrer">Isla Hosgson</a>, <a href="https://orcid.org/0000-0002-3167-1988?ref=rosemckeon.uk" rel="noreferrer">Rosie Mangan</a>, <a href="https://orcid.org/0000-0003-0769-9902?ref=rosemckeon.uk" rel="noreferrer">Ricardo A. Polanczyk</a>, <a href="https://orcid.org/0000-0002-7715-1259?ref=rosemckeon.uk" rel="noreferrer">Matthew Tinsley</a> &amp; <a href="https://orcid.org/0000-0002-1349-4463?ref=rosemckeon.uk" rel="noreferrer">Nils Bunnefeld</a> (2025)</p><h3 id="abstract">Abstract</h3><p>Research games provide a promising avenue for studying social-ecological systems because they can capture complexity and reflect multiple stakeholders&#x2019; perspectives. However, there are few methodological studies on the design, validation and implementation of research games. This paper focuses on the development and implementation of an online multi-player game representing the social-ecological system underlying farmers&#x2019; decision-making. We detail three key aspects of spatially explicit game development: design, validation and game sessions. Our approach provides new integration of social science ecology and practice knowledge using informed-design elements, and demonstrates mediated fieldwork with community mobilizers and personal smartphones. We also provide practical suggestions for scaling-up games to increase the number and diversity of participants and the spatial scale of social-ecological research.</p><p>Published in: <em>Society &amp; Natural Resources</em>, pp. 1-24. <a href="https://doi.org/10.1080/08941920.2025.2456938?ref=rosemckeon.uk">https://doi.org/10.1371/journal.pcbi.1011691</a></p>]]></content:encoded></item><item><title><![CDATA[resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes]]></title><description><![CDATA[The evolution of pesticide resistance is a widespread problem with potentially severe consequences for global food security. We introduce the resevol R package...]]></description><link>https://rosemckeon.uk/resevol/</link><guid isPermaLink="false">6584641497093c0496fc97f9</guid><category><![CDATA[Papers]]></category><category><![CDATA[Tools]]></category><dc:creator><![CDATA[C. Rose McKeon]]></dc:creator><pubDate>Thu, 21 Dec 2023 16:36:58 GMT</pubDate><media:content url="https://images.unsplash.com/photo-1506801842916-2927e4dcf498?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDE5fHxmYXJtfGVufDB8fHx8MTcwMzE3NTgyOXww&amp;ixlib=rb-4.0.3&amp;q=80&amp;w=2000" medium="image"/><content:encoded><![CDATA[<img src="https://images.unsplash.com/photo-1506801842916-2927e4dcf498?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDE5fHxmYXJtfGVufDB8fHx8MTcwMzE3NTgyOXww&amp;ixlib=rb-4.0.3&amp;q=80&amp;w=2000" alt="resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes"><p><a href="https://orcid.org/0000-0001-8343-4995?ref=rosemckeon.uk" rel="noreferrer">Duthie A.B.</a>, <a href="https://orcid.org/0000-0002-3167-1988?ref=rosemckeon.uk" rel="noreferrer">Mangan R.</a>, <a href="https://orcid.org/0000-0002-4198-657X?ref=rosemckeon.uk" rel="noreferrer">McKeon C.R.</a>, <a href="https://orcid.org/0000-0002-7715-1259?ref=rosemckeon.uk" rel="noreferrer">Tinsley M.C.</a> &amp; <a href="https://orcid.org/0000-0001-8937-8381?ref=rosemckeon.uk" rel="noreferrer">Bussi&#xE8;re L.F.</a> (2023) </p><h3 id="abstract">Abstract</h3><p>The evolution of pesticide resistance is a widespread problem with potentially severe consequences for global food security. We introduce the <a href="https://cran.r-project.org/web/packages/resevol/index.html?ref=rosemckeon.uk" rel="noreferrer">resevol R package</a>, which simulates individual-based models of pests with evolving genomes that produce complex, polygenic, and covarying traits affecting pest life history and pesticide resistance. Simulations are modelled on a spatially-explicit and highly customisable landscape in which crop and pesticide application and rotation can vary, making the package a highly flexible tool for both general and tactical models of pest management and resistance evolution. We present the key features of the resevol package and demonstrate its use for a simple example simulating pests with two covarying traits. The resevol R package is open source under GNU Public License. All source code and documentation are available on GitHub.</p><div class="kg-card kg-button-card kg-align-left"><a href="https://bradduthie.github.io/resevol/?ref=rosemckeon.uk" class="kg-btn kg-btn-accent">Resevol on GitHub</a></div><p>Published in: <em>PLOS Computational Biology</em>, 19 (12), p. e1011691. <a href="https://doi.org/10.1371/journal.pcbi.1011691?ref=rosemckeon.uk">https://doi.org/10.1371/journal.pcbi.1011691</a></p>]]></content:encoded></item><item><title><![CDATA[Fungal pathogen resistance can be a highly complex and variable trait]]></title><description><![CDATA[We investigated the genetic complexity of fungal pathogen resistance in a major crop pest and compared resistance to two distinct species of fungal pathogen...]]></description><link>https://rosemckeon.uk/fungal-pathogen-resistance-can-be-a-highly-complex-and-variable-trait/</link><guid isPermaLink="false">68b094fb3c5f63050ac4226b</guid><category><![CDATA[Unsubmitted]]></category><dc:creator><![CDATA[C. Rose McKeon]]></dc:creator><pubDate>Fri, 02 Jun 2023 11:12:00 GMT</pubDate><media:content url="https://images.unsplash.com/photo-1562702100-a38e4a6e79b3?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDR8fHNveXxlbnwwfHx8fDE3NTY0MDMxNTN8MA&amp;ixlib=rb-4.1.0&amp;q=80&amp;w=2000" medium="image"/><content:encoded><![CDATA[<h3 id></h3><blockquote>The writeup for this research is in progress. It has not yet been submitted for peer review, or published as a preprint.</blockquote><img src="https://images.unsplash.com/photo-1562702100-a38e4a6e79b3?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDR8fHNveXxlbnwwfHx8fDE3NTY0MDMxNTN8MA&amp;ixlib=rb-4.1.0&amp;q=80&amp;w=2000" alt="Fungal pathogen resistance can be a highly complex and variable trait"><p>We investigated the genetic complexity of fungal pathogen resistance in a major crop pest and compared the genetic architecture of resistance to two distinct species of fungal pathogen. We also examined whether the underlying genetic differences that contribute to resistance were sensitive to host resource availability. </p><h2 id="summary">Summary</h2><p><em>Helicoverpa armigera</em> (Lepidoptera: Noctuidae) 2nd instar larvae from 103 outbred families were raised on a natural diet of either maize or soy, and exposed to either entomopathogenic fungi <em>Beauveria bassiana</em> (Bb1363), <em>Metarhizium anisopliae</em> (Ma425), or a control exposure in a factorial experiment design. </p><p>Larvae from each pathogen treatment replicate were put in rank order of susceptibility, and DNA from the most and least susceptible larvae, as well as randomly selected controls, was pooled for whole-genome sequencing. Single-nucleotide polymorphisms (SNPs) were tested for association with low pathogen susceptibility.</p><p>Comparison of the locations of candidate SNPs across all four host plant and pathogen treatments revealed the complex nature of fungal pathogen resistance and the importance of genotype by environment interactions (GxE) - SNPs associated with resistance to a given fungal pathogen on one host plant were not the same as those associated with resistance to either pathogen on the other plant.</p>]]></content:encoded></item><item><title><![CDATA[When rare gametes meet]]></title><description><![CDATA[Genome-doubling readily occurs in flowering plants (angiosperms) and is linked with speciation as well as major innovations (seeds and flowers). Beneficial traits (increased flower size and number) are often expressed by the resulting polyploid species...]]></description><link>https://rosemckeon.uk/when-rare-gametes-meet/</link><guid isPermaLink="false">68b1a6a03c5f63050ac42370</guid><category><![CDATA[Unsubmitted]]></category><dc:creator><![CDATA[C. Rose McKeon]]></dc:creator><pubDate>Mon, 21 Jun 2021 15:50:00 GMT</pubDate><media:content url="https://images.unsplash.com/photo-1594118152787-4967e8740b88?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDIzfHxmbG93ZXIlMjBzdGFtZW58ZW58MHx8fHwxNzYyMjY5MDU4fDA&amp;ixlib=rb-4.1.0&amp;q=80&amp;w=2000" medium="image"/><content:encoded><![CDATA[<blockquote>This work was my undergraduate honours project (first class). It has not yet been submitted for peer review.</blockquote><img src="https://images.unsplash.com/photo-1594118152787-4967e8740b88?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDIzfHxmbG93ZXIlMjBzdGFtZW58ZW58MHx8fHwxNzYyMjY5MDU4fDA&amp;ixlib=rb-4.1.0&amp;q=80&amp;w=2000" alt="When rare gametes meet"><p>Genome-doubling readily occurs in flowering plants (angiosperms) and is linked with speciation as well as major innovations (seeds and flowers). Beneficial traits (increased flower size and number) are often expressed by the resulting polyploid species, making them useful crops as well as increasing their invasive potential. However, after a century of research, the forces that drive polyploid evolution are still unclear. The primary mechanism of formation by gametic nonreduction creates an inherent negative selection pressure by the interaction of triploid sterility and pollen-swamping. I ask whether the combined cost of these emergent properties can be quantified by using an individual-based modelling approach. Specifically, I investigate whether increasing the rate of nonreduction is sufficient to give evolving polyploids enough of an advantage that they can reach stable fixation. Modelling this system revealed that in order to ultimately outcompete their diploid progenitors (as well as the sterile offspring that interploidy matings create), the rate of nonreduction had to exceed the natural rate 27-fold. Extinction probability above this rate was 0.686, and fixation of polyploidy was extremely unstable. The rate of nonreduction required to achieve stable fixation was 83-fold greater than the natural rate. Extinction probability reached 0.719, and the probability of attaining stable fixation was 0.070. These findings support the idea that polyploidy most often leads to evolutionary &apos;dead-ends&apos;. They also indicate that the strength of triploid sterility must be drastically reduced, or some other beneficial adaptation would be required in order for polyploidy to evolve and persist.</p><h3 id="available-on-github">Available on GitHub:</h3><ul><li>An individual-based model, written as an R package&#xA0;<em>sploidy</em>, that simulates the evolution of polyploidy in flowering plants.</li><li>The&#xA0;<a href="https://github.com/rosemckeon/honours-project/blob/master/scripts/?ref=rosemckeon.uk">scripts</a>&#xA0;and&#xA0;<a href="https://github.com/rosemckeon/honours-project/blob/master/data/?ref=rosemckeon.uk">data</a>&#xA0;output by running the model, parameterised to simulate the life-cycle of&#xA0;<em>Erythranthe guttata</em>&#xA0;(formerly:&#xA0;<em>Mimulus guttatus</em>).</li><li>The&#xA0;<a href="https://github.com/rosemckeon/honours-project/blob/master/thesis/When-rare-gametes-meet_2417024.pdf?ref=rosemckeon.uk" rel="noreferrer">thesis itself</a>,&#xA0;which explains the model, and all the&#xA0;<a href="https://github.com/rosemckeon/honours-project/blob/master/thesis/?ref=rosemckeon.uk">files</a>&#xA0;that went into creating that final document.</li><li>A tagged version of the model in the state in which it was used to inform my thesis (v0.2.2).</li></ul><div class="kg-card kg-button-card kg-align-center"><a href="https://github.com/rosemckeon/honours-project?ref=rosemckeon.uk" class="kg-btn kg-btn-accent">GitHub Repository</a></div>]]></content:encoded></item><item><title><![CDATA[Population and Community Ecology Teaching Tools]]></title><description><![CDATA[Using Shiny to create interactive R models for teaching population and community ecology. ]]></description><link>https://rosemckeon.uk/population-and-community-ecology-teaching-tools/</link><guid isPermaLink="false">67a641f96f0afd0566cae442</guid><category><![CDATA[Tools]]></category><dc:creator><![CDATA[C. Rose McKeon]]></dc:creator><pubDate>Mon, 01 Oct 2018 08:00:00 GMT</pubDate><media:content url="https://images.unsplash.com/photo-1591981813227-fb37f0cf04ad?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDUwfHx3b2xmJTIwaHVudGluZ3xlbnwwfHx8fDE3Mzg5NDkyMDR8MA&amp;ixlib=rb-4.0.3&amp;q=80&amp;w=2000" medium="image"/><content:encoded><![CDATA[<img src="https://images.unsplash.com/photo-1591981813227-fb37f0cf04ad?crop=entropy&amp;cs=tinysrgb&amp;fit=max&amp;fm=jpg&amp;ixid=M3wxMTc3M3wwfDF8c2VhcmNofDUwfHx3b2xmJTIwaHVudGluZ3xlbnwwfHx8fDE3Mzg5NDkyMDR8MA&amp;ixlib=rb-4.0.3&amp;q=80&amp;w=2000" alt="Population and Community Ecology Teaching Tools"><p>Working with <a href="https://orcid.org/0000-0001-8705-3719?ref=rosemckeon.uk" rel="noreferrer">Dr C.E. Timothy Paine</a>, then the Biology Programme Director at the <a href="https://www.stir.ac.uk/?ref=rosemckeon.uk" rel="noreferrer">University of Stirling</a>, we overhauled the undergraduate Population and Community Ecology module. In previous years, pupils had been given R scripts to run. I took those R scripts and used Shiny to make the models interactive, making the module far more accessible to students. Whereas there used to be a large focus on R programming skills, the teaching post-app development became more focused on ecological model mechanics and theory - leaving the R skills to be taught in the R module.</p><figure class="kg-card kg-gallery-card kg-width-wide kg-card-hascaption"><div class="kg-gallery-container"><div class="kg-gallery-row"><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/02/01-population-growth-and-regulation-2.png" width="2000" height="1577" loading="lazy" alt="Population and Community Ecology Teaching Tools" srcset="https://rosemckeon.uk/content/images/size/w600/2025/02/01-population-growth-and-regulation-2.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/02/01-population-growth-and-regulation-2.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/02/01-population-growth-and-regulation-2.png 1600w, https://rosemckeon.uk/content/images/2025/02/01-population-growth-and-regulation-2.png 2390w" sizes="(min-width: 720px) 720px"></div><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/02/02-matrix-population-models-1.png" width="2000" height="1687" loading="lazy" alt="Population and Community Ecology Teaching Tools" srcset="https://rosemckeon.uk/content/images/size/w600/2025/02/02-matrix-population-models-1.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/02/02-matrix-population-models-1.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/02/02-matrix-population-models-1.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/02/02-matrix-population-models-1.png 2400w" sizes="(min-width: 720px) 720px"></div><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/02/03-meta-populations-1.png" width="2000" height="1360" loading="lazy" alt="Population and Community Ecology Teaching Tools" srcset="https://rosemckeon.uk/content/images/size/w600/2025/02/03-meta-populations-1.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/02/03-meta-populations-1.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/02/03-meta-populations-1.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/02/03-meta-populations-1.png 2400w" sizes="(min-width: 720px) 720px"></div></div><div class="kg-gallery-row"><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/02/04-stochasticity-and-hunting-1.png" width="2000" height="1752" loading="lazy" alt="Population and Community Ecology Teaching Tools" srcset="https://rosemckeon.uk/content/images/size/w600/2025/02/04-stochasticity-and-hunting-1.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/02/04-stochasticity-and-hunting-1.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/02/04-stochasticity-and-hunting-1.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/02/04-stochasticity-and-hunting-1.png 2400w" sizes="(min-width: 720px) 720px"></div><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/02/05-predation-1.png" width="2000" height="1593" loading="lazy" alt="Population and Community Ecology Teaching Tools" srcset="https://rosemckeon.uk/content/images/size/w600/2025/02/05-predation-1.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/02/05-predation-1.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/02/05-predation-1.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/02/05-predation-1.png 2400w" sizes="(min-width: 720px) 720px"></div></div><div class="kg-gallery-row"><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/02/06-competition-1.png" width="2000" height="1464" loading="lazy" alt="Population and Community Ecology Teaching Tools" srcset="https://rosemckeon.uk/content/images/size/w600/2025/02/06-competition-1.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/02/06-competition-1.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/02/06-competition-1.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/02/06-competition-1.png 2400w" sizes="(min-width: 720px) 720px"></div><div class="kg-gallery-image"><img src="https://rosemckeon.uk/content/images/2025/02/07-food-webs-1.png" width="2000" height="1432" loading="lazy" alt="Population and Community Ecology Teaching Tools" srcset="https://rosemckeon.uk/content/images/size/w600/2025/02/07-food-webs-1.png 600w, https://rosemckeon.uk/content/images/size/w1000/2025/02/07-food-webs-1.png 1000w, https://rosemckeon.uk/content/images/size/w1600/2025/02/07-food-webs-1.png 1600w, https://rosemckeon.uk/content/images/size/w2400/2025/02/07-food-webs-1.png 2400w" sizes="(min-width: 720px) 720px"></div></div></div><figcaption><p><span style="white-space: pre-wrap;">Screenshots of the Shiny teaching tools</span></p></figcaption></figure><p>I utilised my experience with web development to give the Shiny apps a responsive layout and make the tools compatible with mobile devices. Student feedback regarding these improvements to the course has been incredibly positive.</p>]]></content:encoded></item></channel></rss>